Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs2904982 | chr11:65004301 | G/T | 3.87E-14 | 214 | 2.17 | 12.33 | 9.05 | KM Plot |
| BLCA | rs2904985 | chr11:65012974 | C/G | 0 | 215 | 2.73 | 12.4 | 8.87 | KM Plot |
| BLCA | rs2957110 | chr11:65001046 | A/G | 0.000155 | 215 | 5.13 | 12.37 | 9.23 | KM Plot |
| BLCA | rs2957111 | chr11:65003447 | A/C | 2.98E-14 | 213 | 2.17 | 10.13 | 9.07 | KM Plot |
| BLCA | rs2957112 | chr11:65012857 | A/G | 0 | 215 | 2.73 | 12.4 | 8.87 | KM Plot |
| BLCA | rs3015999 | chr11:65011466 | C/T | 0 | 215 | 2.73 | 12.33 | 8.87 | KM Plot |
| BLCA | rs3016000 | chr11:65036835 | G/A | 0 | 215 | 8.87 | 12.4 | 2.73 | KM Plot |
| BLCA | rs3016002 | chr11:65003197 | C/T | 2.52E-8 | 215 | 4.22 | 12.7 | 8.7 | KM Plot |
| BLCA | rs3066454 | chr7:26038596 | GTCTTT/G | 6.24E-10 | 213 | 10.6 | 6.45 | 2.27 | KM Plot |
| BLCA | rs3087772 | chr18:5238828 | C/T | 0.000103 | 209 | 9.07 | 12.82 | 3.48 | KM Plot |
| BLCA | rs3110823 | chr7:135357476 | A/C | 3.77E-5 | 216 | 9.78 | 11.88 | 3.17 | KM Plot |
| BLCA | rs318860 | chr8:50833528 | C/T | 1.59E-5 | 216 | 10.53 | 9.03 | 0.98 | KM Plot |
| BLCA | rs318862 | chr8:50834623 | G/A | 1.59E-5 | 216 | 10.53 | 9.03 | 0.98 | KM Plot |
| BLCA | rs318864 | chr8:50837982 | A/G | 1.59E-5 | 216 | 10.53 | 9.03 | 0.98 | KM Plot |
| BLCA | rs318870 | chr8:50849341 | C/A | 2.63E-5 | 215 | 1.87 | 9.05 | 10.33 | KM Plot |